Constructor Detail

• RawRGBToDicomMultiFrame

  public RawRGBToDicomMultiFrame​(java.lang.String formatFileName,
                                 java.lang.String inputFolderName,
                                 java.lang.String inputFileNameSuffix,
                                 java.lang.String outputFolderName,
                                 java.lang.String patientName,
                                 java.lang.String patientID,
                                 java.lang.String studyID,
                                 java.lang.String seriesNumber)
                          throws java.io.IOException,
                                 DicomException

  Read raw RGB color single frame image input format files (such as from Visible Human) into one or more DICOM multi-frame secondary capture images.

  Will obtain the description of the geometry of the raw RGB files, e.g., a Visible Human README file, from the specified format description file.

  The order of the frames is assumed to be by their lexicographically sorted file name (hence numeric file names need to be the same length, e.g., zero-padded.

  Parameters:

  formatFileName -

  inputFolderName -

  inputFileNameSuffix -

  outputFolderName -

  patientName -

  patientID -

  studyID -

  seriesNumber -

  Throws:

  java.io.IOException

  DicomException

Method Detail

• generateGeometryFunctionalGroupsFromRawRGBInformation

  public static AttributeList generateGeometryFunctionalGroupsFromRawRGBInformation​(RawRGBInformation rawRGBInfo,
                                                                                    AttributeList list,
                                                                                    int numberOfFrames)
                                                                             throws DicomException

  Read a per-frame and shared functional group sequences for the geometry defined in a raw image file description.

  Parameters:

  rawRGBInfo - description of the size of the raw image

  list - an existing (possibly empty) attribute list, if null, a new one will be created; may already shared and per-frame functional group sequences or they will be added

  numberOfFrames - return attribute list with per-frame and shared functional group sequences for geometry added

  Throws:

  DicomException

• generateDICOMPixelDataModuleAttributesFromRawRGBFiles

  public static AttributeList generateDICOMPixelDataModuleAttributesFromRawRGBFiles​(java.lang.String[] inputFileNames,
                                                                                    java.lang.String inputFileNameSuffix,
                                                                                    RawRGBInformation rawRGBInfo,
                                                                                    AttributeList list)
                                                                             throws java.io.IOException,
                                                                                    DicomException

  Create DICOM Pixel Data Module attributes.

  Parameters:

  inputFileNames - the single frame raw RGB format image files sorted in the correct order

  inputFileNameSuffix - so we can tell whether or not the input files are compressed

  rawRGBInfo - description of the size of the raw image already read from the inputFile

  list - an existing (possibly empty) attribute list, if null, a new one will be created; may already include "better" image pixel module attributes to use return attribute list with Image Pixel Module (including Pixel Data) and other attributes added

  Throws:

  java.io.IOException

  DicomException

• getSortedInputFileNames

  protected static java.lang.String[] getSortedInputFileNames​(java.lang.String inputFolderName,
                                                              java.lang.String inputFileNameSuffix)
                                                       throws java.io.IOException

  Throws:

  java.io.IOException

• main

  public static void main​(java.lang.String[] arg)

  Read raw RGB color single frame image input format files (such as from Visible Human) into one or more DICOM multi-frame secondary capture images.

  Will obtain the description of the geometry of the raw RGB files, e.g., a Visible Human README file, from the specified format description file.

  Parameters:

  arg - eight parameters, the format description file, inputFolder, inputFileNameSuffix, outputFolder, patientName, patientID, studyID, seriesNumber