Constructor Detail

• NIfTI1ToDicom

  public NIfTI1ToDicom​(java.lang.String inputFileName,
                       java.lang.String outputFileName,
                       java.lang.String patientName,
                       java.lang.String patientID,
                       java.lang.String studyID,
                       java.lang.String seriesNumber,
                       java.lang.String instanceNumber)
                throws java.io.IOException,
                       DicomException,
                       NIfTI1Exception

  Read a NIfTI-1 image input format files and create an image of a specified or appropriate SOP Class.

  Parameters:

  inputFileName -

  outputFileName -

  patientName -

  patientID -

  studyID -

  seriesNumber -

  instanceNumber -

  Throws:

  java.io.IOException

  DicomException

  NIfTI1Exception

• NIfTI1ToDicom

  public NIfTI1ToDicom​(java.lang.String inputFileName,
                       java.lang.String outputFileName,
                       java.lang.String patientName,
                       java.lang.String patientID,
                       java.lang.String studyID,
                       java.lang.String seriesNumber,
                       java.lang.String instanceNumber,
                       java.lang.String modality,
                       java.lang.String sopClass)
                throws java.io.IOException,
                       DicomException,
                       NIfTI1Exception

  Read a NIfTI-1 image input format files and create an image of a specified or appropriate SOP Class.

  Parameters:

  inputFileName -

  outputFileName -

  patientName -

  patientID -

  studyID -

  seriesNumber -

  instanceNumber -

  modality - may be null

  sopClass - may be null

  Throws:

  java.io.IOException

  DicomException

  NIfTI1Exception

Method Detail

• generateGeometryFunctionalGroupsFromNIfTI1Header

  public static AttributeList generateGeometryFunctionalGroupsFromNIfTI1Header​(NIfTI1Header nifti,
                                                                               AttributeList list,
                                                                               int numberOfFrames)
                                                                        throws DicomException

  Read a per-frame and shared functional group sequences for the geometry defined in a NIfTI-1 file header.

  Parameters:

  nifti - a NIfTI-1 header

  list - an existing (possibly empty) attribute list, if null, a new one will be created; may already shared and per-frame functional group sequences or they will be added

  numberOfFrames - return attribute list with per-frame and shared functional group sequences for geometry added

  Throws:

  DicomException

• generateDICOMPixelDataModuleAttributesFromNIfTI1File

  public static AttributeList generateDICOMPixelDataModuleAttributesFromNIfTI1File​(java.io.File inputFile,
                                                                                   NIfTI1Header nifti,
                                                                                   AttributeList list)
                                                                            throws java.io.IOException,
                                                                                   DicomException,
                                                                                   NIfTI1Exception

  Using a NIfTI-1 image input file and header, create DICOM Pixel Data Module attributes.

  Parameters:

  inputFile - a NIfTI-1 format image file

  nifti - a NIfTI-1 header already read from the inputFile

  list - an existing (possibly empty) attribute list, if null, a new one will be created; may already include "better" image pixel module attributes to use return attribute list with Image Pixel Module (including Pixel Data) and other attributes added

  Throws:

  java.io.IOException

  DicomException

  NIfTI1Exception

• main

  public static void main​(java.lang.String[] arg)

  Read a NIfTI-1 image input format files and create an image of a specified or appropriate SOP Class.

  Parameters:

  arg - seven, eight or nine parameters, the inputFile, outputFile, patientName, patientID, studyID, seriesNumber, instanceNumber, and optionally the modality, and SOP Class